FTD Analysis System

TOPSY DATABASE. AI-powered systematic analysis of Formal Thought Disorder (FTD) in clinical interview transcripts using the TALD (Thought and Language Disorder) scale.

Branch Consolidation Workflow

This project uses a custom workflow to harvest generated output files from multiple feature branches and merge them into main without performing full Git merges.

Scripts

1. consolidate_outputs.sh

• Purpose: Iterates through all remote branches.
• Action: Extracts only files matching the pattern **/output* (preserving their subdirectory location) and commits them to the current branch.
• Usage: Run this while on main to gather results.

2. cleanup_branches.sh

• Purpose: repository hygiene after consolidation.
• Action: Deletes all local and remote branches, leaving only main.
• ⚠️ Warning: This action is destructive and cannot be undone. Ensure consolidate_outputs.sh ran successfully before running this.

How to Run

1. Ensure you are on main:

   git checkout main
   git pull origin main
   

2. Harvest the files:

   ./consolidate_outputs.sh
   

   Check your file tree to ensure all "output" files are present.

3. Clean up the repository:

   ./cleanup_branches.sh
   

   Follow the prompt (type y) to confirm deletion of remote branches.